MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-1343

Family name MIR-1343 (all species)
Seed UCCUAGG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1343  Cfa-Mir-1343  Cpo-Mir-1343  Dno-Mir-1343  Eca-Mir-1343  Hsa-Mir-1343  Laf-Mir-1343  Ocu-Mir-1343  Pab-Mir-1343 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021926.1: 28420297-28420355 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAACAGGACGAUGAUCCUGGCGUUGGUGCUGGGGAGCGGCCCCCGGGGUGGGCCUCCACUCUGGCCCCUCCUAGGGCCAGCACUCAGGAUCCGGUCCAGCUCAACGUCAGCCACUGAC
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Structure
        10          20         30         40        50         
AAAACAGGACGAUGAUC--|   C UU  - G     GA  -     CC    U  GCCUCC 
                   CUGG G  GG U CUGGG  GC GGCCC  GGGG GG      A
                   GACC U  CC A GACUC  CG CCGGG  CCUC CC      C
CAGUCACCGACUGCAACUC^   - GG  U G     A-  A     AU    -  CGGUCU 
       110       100         90         80        70         60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-1343_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGGGAGCGGCCCCCGGGGUGG -22
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Mature sequence

Cja-Mir-1343_3p (predicted)
mirBase accessionNone
Sequence 
38- CUCCUAGGGCCAGCACUCAGG -59
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