| MirGeneDB ID | Cja-Mir-1343 |
|---|---|
| Family name | MIR-1343 (all species) |
| Seed | UCCUAGG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1343 Cfa-Mir-1343 Cpo-Mir-1343 Dno-Mir-1343 Eca-Mir-1343 Hsa-Mir-1343 Laf-Mir-1343 Ocu-Mir-1343 Pab-Mir-1343 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021926.1: 28420297-28420355 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAAACAGGACGAUGAUCCUGGCGUUGGUGCUGGGGAGCGGCCCCCGGGGUGGGCCUCCACUCUGGCCCCUCCUAGGGCCAGCACUCAGGAUCCGGUCCAGCUCAACGUCAGCCACUGACGet precursor sequence |
| Structure | 10 20 30 40 50 AAAACAGGACGAUGAUC--| C UU - G GA - CC U GCCUCC CUGG G GG U CUGGG GC GGCCC GGGG GG A GACC U CC A GACUC CG CCGGG CCUC CC C CAGUCACCGACUGCAACUC^ - GG U G A- A AU - CGGUCU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-1343_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UGGGGAGCGGCCCCCGGGGUGG -22
Get sequence
|
| Mature sequence | Cja-Mir-1343_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- CUCCUAGGGCCAGCACUCAGG -59
Get sequence
|
