MirGeneDB ID | Eca-Mir-1343 |
Family name |
MIR-1343 (all species) |
Seed |
UCCUGGG |
Species |
Horse (Equus caballus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-1343
Cfa-Mir-1343
Cja-Mir-1343
Cpo-Mir-1343
Dno-Mir-1343
Hsa-Mir-1343
Laf-Mir-1343
Ocu-Mir-1343
Pab-Mir-1343
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_002863925.1_EquCab3.0) |
CM009159.1: 1681153-1681211 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAACAGGAUGAUGAUGCUGGCUUCGGUGCUGGGGAGCGGCCCCCGGGCGGGCCUCUGCUCCGGCCCCUCCUGGGGCCCGCACUCUCGCUCCGGGCCCGCUCCACCUUGCCUGCUGACA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAACAGGAUGAUGAUGCU---| U U U A C C CCUCUG
GGCU CGG GC GGGG GCGG CCCCGGG GGG \
CCGG GCC CG UCUC CGCC GGGGUCC CCC C
ACAGUCGUCCGUUCCACCUCGC^ - U C A C U CGGCCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Eca-Mir-1343_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UGGGGAGCGGCCCCCGGGCGGG -22
Get sequence
|
Mature sequence |
Eca-Mir-1343_3p |
mirBase accession | None |
Sequence |
37- CUCCUGGGGCCCGCACUCUCGC -59
Get sequence
|