MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-672

Family name MIR-672 (all species)
Seed GAGGUUG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-672
Paralogues
Orthologues Cja-Mir-672  Dno-Mir-672  Ete-Mir-672  Laf-Mir-672  Mmr-Mir-672  Mmu-Mir-672  Ocu-Mir-672  Rno-Mir-672 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_26: 21954918-21954978 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UUAAAAGAUGGUUAUACAGAACUUUAGUUUUGAGGUUGGUGUACUGUGUGUGGGUAUACAUAUUUAUCCCACACAGCCACUAUGUUUCAAAGCAAAGGUGCACAUCUUUGUCUGCCAUCUC
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Structure
        10        20          30         40        50        60
UUAAAAGAUGGUUAUACAGA--     A       GG -|    UA       U  GUAUAC 
                      ACUUU GUUUUGA  U UGGUG  CUGUGUG GG      A
                      UGGAA CGAAACU  G AUCAC  GACACAC CC      U
CUCUACCGUCUGUUUCUACACG     A       UU U^    C-       -  UAUUUA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-672_5p (predicted)

mirBase accessionMIMAT0047371
Sequence
0- UGAGGUUGGUGUACUGUGUGUGG -23
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Star sequence

Cpo-Mir-672_3p* (predicted)

mirBase accessionMIMAT0047372
Sequence
38- CCACACAGCCACUAUGUUUCAAA -61
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