MirGeneDB 3.0
MirGeneDB ID

Cte-Novel-1-P1e2

Family name CTE-NOVEL-1 (all species)
Seed AAGCCCC
Species Polychaete worm (Capitella teleta)
MiRBase ID
Paralogues Cte-Novel-1-P1a1  Cte-Novel-1-P1a2a  Cte-Novel-1-P1a2b  Cte-Novel-1-P1a3  Cte-Novel-1-P1a4  Cte-Novel-1-P1a5  Cte-Novel-1-P1a6  Cte-Novel-1-P1a7a  Cte-Novel-1-P1a7b  Cte-Novel-1-P1b1  Cte-Novel-1-P1b2  Cte-Novel-1-P1c1a  Cte-Novel-1-P1c1b  Cte-Novel-1-P1c2  Cte-Novel-1-P1c3  Cte-Novel-1-P1c4  Cte-Novel-1-P1c5  Cte-Novel-1-P1c6a  Cte-Novel-1-P1c6b  Cte-Novel-1-P1c7  Cte-Novel-1-P1d  Cte-Novel-1-P1e1a  Cte-Novel-1-P1e1b  Cte-Novel-1-P1e3  Cte-Novel-1-P1e4  Cte-Novel-1-P1e5  Cte-Novel-1-P1e6a  Cte-Novel-1-P1e6b  Cte-Novel-1-P1e7  Cte-Novel-1-P1e8a  Cte-Novel-1-P1e8b  Cte-Novel-1-P1e8c  Cte-Novel-1-P1e9  Cte-Novel-1-P1e10  Cte-Novel-1-P1f1-v1  Cte-Novel-1-P1f1-v2  Cte-Novel-1-P1f2a-v1  Cte-Novel-1-P1f2a-v2  Cte-Novel-1-P1f2b-v1  Cte-Novel-1-P1f2b-v2  Cte-Novel-1-P1f2c-v1  Cte-Novel-1-P1f2c-v2  Cte-Novel-1-P1f2d-v1  Cte-Novel-1-P1f2d-v2  Cte-Novel-1-P1f3-v1  Cte-Novel-1-P1f3-v2 
Orthologues
Node of Origin (locus) C. teleta
Node of Origin (family) C. teleta
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_324: 220782-220839 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGAAUUGUGUUGAGUAUGAUUGGCUUUUUCUUGGACCUCGGGUGCUUGCGUUUCAAUUGCAUCAUAAGCCCCUUUGGUAUAAGAAGGAGCUGAAGCUCGGUCUGCUUCUCAAAGAU
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Structure
        10        20          30        40         50        
CAAGAAUUGUGUUGAGUAUGA-- UG           G   UC-|  U     CGUUUCA 
                       U  GCUUUUUCUUG ACC   GGG GCUUG       A
                       A  CGAGGAAGAAU UGG   CCC CGAAU       U
UAGAAACUCUUCGUCUGGCUCGA GU           A   UUU^  -     ACUACGU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr To
Star sequence

Cte-Novel-1-P1e2_5p*
mirBase accessionNone
Sequence 
0- UCUUGGACCUCGGGUGCUUGCG -22
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Mature sequence

Cte-Novel-1-P1e2_3p
mirBase accessionNone
Sequence 
36- UAAGCCCCUUUGGUAUAAGAAG -58
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