MirGeneDB 3.0
MirGeneDB ID

Cte-Novel-1-P1f2c-v1

Family name CTE-NOVEL-1 (all species)
Seed AAGCAUU
Species Polychaete worm (Capitella teleta)
MiRBase ID
Paralogues Cte-Novel-1-P1a1  Cte-Novel-1-P1a2a  Cte-Novel-1-P1a2b  Cte-Novel-1-P1a3  Cte-Novel-1-P1a4  Cte-Novel-1-P1a5  Cte-Novel-1-P1a6  Cte-Novel-1-P1a7a  Cte-Novel-1-P1a7b  Cte-Novel-1-P1b1  Cte-Novel-1-P1b2  Cte-Novel-1-P1c1a  Cte-Novel-1-P1c1b  Cte-Novel-1-P1c2  Cte-Novel-1-P1c3  Cte-Novel-1-P1c4  Cte-Novel-1-P1c5  Cte-Novel-1-P1c6a  Cte-Novel-1-P1c6b  Cte-Novel-1-P1c7  Cte-Novel-1-P1d  Cte-Novel-1-P1e1a  Cte-Novel-1-P1e1b  Cte-Novel-1-P1e2  Cte-Novel-1-P1e3  Cte-Novel-1-P1e4  Cte-Novel-1-P1e5  Cte-Novel-1-P1e6a  Cte-Novel-1-P1e6b  Cte-Novel-1-P1e7  Cte-Novel-1-P1e8a  Cte-Novel-1-P1e8b  Cte-Novel-1-P1e8c  Cte-Novel-1-P1e9  Cte-Novel-1-P1e10  Cte-Novel-1-P1f1-v1  Cte-Novel-1-P1f1-v2  Cte-Novel-1-P1f2a-v1  Cte-Novel-1-P1f2a-v2  Cte-Novel-1-P1f2b-v1  Cte-Novel-1-P1f2b-v2  Cte-Novel-1-P1f2c-v2  Cte-Novel-1-P1f2d-v1  Cte-Novel-1-P1f2d-v2  Cte-Novel-1-P1f3-v1  Cte-Novel-1-P1f3-v2 
Orthologues
Node of Origin (locus) C. teleta
Node of Origin (family) C. teleta
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_60: 277283-277344 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAGUUUCCUAUUCUUUGGCACUCACUCUUCUGUGUACUGCAUGUGCUUUUGUGAUGAACCAUUUGAUCAUAAGCAUUGCUAGUACAGGGAUGGGUGAUGUUGGUACAGCCAGAGCUCAGGU
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Structure
        10           20        30         40        50        60
UGAGUUUCCUAUUCUUU---|   C      U   G      -   U      U  UGAUGAA 
                    GGCA UCACUC UCU UGUACU GCA GUGCUU UG       C
                    UUGU AGUGGG AGG ACAUGA CGU UACGAA AC       C
UGGACUCGAGACCGACAUGG^   -      U   G      U   -      U  UAGUUUA 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr To
Star sequence

Cte-Novel-1-P1f2c-v1_5p*
mirBase accessionNone
Sequence 
0- CUGUGUACUGCAUGUGCUUUUG -22
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Mature sequence

Cte-Novel-1-P1f2c-v1_3p
mirBase accessionNone
Sequence 
40- UAAGCAUUGCUAGUACAGGGAU -62
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