MirGeneDB ID | Dan-Mir-973 |
Family name |
MIR-973 (all species) |
Seed |
CUGUUCA |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Dme-Mir-973
Dmo-Mir-973
Dsi-Mir-973
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Drosophila
|
Genome context (Dana_caf1) |
scaffold_13417: 2478669-2478737 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAACUUAAUAUUGAAAUGACACCGACUCCUCGUGUUUGGCGAUUGAACCUGGAUUUUUAAUUUUCGAGUACGAGAAAUCUGUUCAUUCCUCGACACUAGUAGUUGGCGCGACACUCAGCGCACCAAACA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAACUUAAUAUUGAAAUGACA--| C C U C U CU UUUAAUUUU
CCGACU CU GUGUU GG GA UGAAC GGAUU C
GGUUGA GA CACAG UC CU ACUUG UCUAA G
ACAAACCACGCGACUCACAGCGC^ U U C - U -- AGAGCAUGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dan-Mir-973_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CGUGUUUGGCGAUUGAACCUGGAUU -25
Get sequence
|
Mature sequence |
Dan-Mir-973_3p |
mirBase accession | None |
Sequence |
47- UCUGUUCAUUCCUCGACACUAG -69
Get sequence
|