MirGeneDB 3.0

MirGeneDB ID

Dme-Mir-4969

Family name MIR-4969 (all species)
Seed GGUAAAU
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-4969
Paralogues
Orthologues Dsi-Mir-4969  Dya-Mir-4969 
Node of Origin (locus) D. melanogaster subgroup
Node of Origin (family) D. melanogaster subgroup
Genome context
(Drosophila_melanogaster_BDGP6)
3R: 21798535-21798651 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4969)
Mir-999 3R: 21798249-21798308 [-] UCSC Ensembl
Mir-4969 3R: 21798535-21798651 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUGUUUUUGUAUGGAUUUUUCGGCGUGGCGGUAAAUUGAAUGAUGAGUGGGAGGAUGUCGCUGCCAUUGUUUGGUUGAUAAGGGAGCCUGGCGCACUAUUACCUGGCUCUCUGAAACGAGAGCCCACCUGUCAAUCAAUACCACCCCGCCGAUGCGACAUCAUCAUAAUAAUCAU
Get precursor sequence
Structure
        10        20          30        40        50        60        70        80         
AUAUGUUUUUGUAUGGAUUUU--|     U  C    AA    A    GA     AGGAUGUCGCUGCCAUUGUUUGGUUGAUAAGGGAG 
                       UCGGCG GG GGUA  UUGA UGAU  GUGGG                                   \
                       AGCCGC CC CCAU  AACU ACUG  CACCC                                   C
UACUAAUAAUACUACUACAGCGU^     C  A    --    A    UC     GAGAGCAAAGUCUCUCGGUCCAUUAUCACGCGGUC 
     170       160       150         140       130       120       110       100        90
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo He He La Ov Sa Wh
Mature sequence

Dme-Mir-4969_5p

mirBase accessionMIMAT0020195
Sequence
0- CGGUAAAUUGAAUGAUGAGUGGGA -24
Get sequence
Star sequence

Dme-Mir-4969_3p*

mirBase accessionMIMAT0020196
Sequence
95- CCACCUGUCAAUCAAUACCACC -117
Get sequence