MirGeneDB ID | Dre-Mir-722-P1-v1 |
Family name |
MIR-722 (all species) |
Seed |
UUUGCAG |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
|
Paralogues |
Dre-Mir-722-P1-v2
Dre-Mir-722-P2-v1
Dre-Mir-722-P2-v2
|
Orthologues |
Gmo-Mir-722-P1-v1
Gmo-Mir-722-P1-v2
Lch-Mir-722
Mal-Mir-722-P1-v1
Mal-Mir-722-P1-v2
Tni-Mir-722-P1-v1
Tni-Mir-722-P1-v2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Osteichthyes
|
Genome context (danRer11) |
chr3: 49815209-49815273 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACCUGCCCACAGACUGGAACAGAAUGGAAUUUGAAACGUUUUAGCCAAAAAUGUUUCCAUGGUAAAGGUGUUUUUUGCAGAAACGUUUCAGAUUUCGUUCUGUUCUCCAACUACGGGGAUGAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AACCUGCCCACAGACUG--| A C UGUUUCCAU
GAACAGAAUGGAAUUUGAAACGUUUU GC AAAAA \
CUUGUCUUGCUUUAGACUUUGCAAAG CG UUUUU G
AAAGUAGGGGCAUCAACCU^ A U GUGGAAAUG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Dre-Mir-722-P1-v1_5p* |
mirBase accession | None |
Sequence |
0- UUUGAAACGUUUUAGCCAAAAA -22
Get sequence
|
Mature sequence |
Dre-Mir-722-P1-v1_3p |
mirBase accession | None |
Sequence |
43- UUUUGCAGAAACGUUUCAGAUU -65
Get sequence
|