MirGeneDB ID | Dre-Mir-722-P1-v2 |
Family name |
MIR-722 (all species) |
Seed |
UUGCAGA |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
|
Paralogues |
Dre-Mir-722-P1-v1
Dre-Mir-722-P2-v1
Dre-Mir-722-P2-v2
|
Orthologues |
Gmo-Mir-722-P1-v1
Gmo-Mir-722-P1-v2
Lch-Mir-722
Mal-Mir-722-P1-v1
Mal-Mir-722-P1-v2
Tni-Mir-722-P1-v1
Tni-Mir-722-P1-v2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Osteichthyes
|
Genome context (danRer11) |
chr3: 49815209-49815273 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACCUGCCCACAGACUGGAACAGAAUGGAAUUUGAAACGUUUUAGCCAAAAAUGUUUCCAUGGUAAAGGUGUUUUUUGCAGAAACGUUUCAGAUUUCGUUCUGUUCUCCAACUACGGGGAUGAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AACCUGCCCACAGACUG--| A C AUGUUUCCAU
GAACAGAAUGGAAUUUGAAACGUUUU GC AAAA \
CUUGUCUUGCUUUAGACUUUGCAAAG CG UUUU G
AAAGUAGGGGCAUCAACCU^ A U UGUGGAAAUG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Star sequence |
Dre-Mir-722-P1-v2_5p* |
mirBase accession | None |
Sequence |
0- UUUGAAACGUUUUAGCCAAAA -21
Get sequence
|
Mature sequence |
Dre-Mir-722-P1-v2_3p |
mirBase accession | None |
Sequence |
44- UUUGCAGAAACGUUUCAGAUU -65
Get sequence
|