Mir-303

MirGeneDB ID

Dsi-Mir-303

Family name

MIR-303 (all species)

Seed

UGGCAUU

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-303

Paralogues

Orthologues

Dme-Mir-303 Dya-Mir-303

Node of Origin (locus)

D. melanogaster subgroup

Node of Origin (family)

D. melanogaster subgroup

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

X: 3955015-3955071 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-303)

Mir-982-P3 X: 3953288-3953349 [-] UCSC Ensembl
Mir-2582-P2 X: 3953548-3953605 [-] UCSC Ensembl
Mir-982-P2 X: 3953690-3953747 [-] UCSC Ensembl
Mir-2582-P1 X: 3954183-3954240 [-] UCSC Ensembl
Mir-982-P1 X: 3954323-3954388 [-] UCSC Ensembl
Mir-303 X: 3955015-3955071 [-] UCSC Ensembl
Mir-983 X: 3957115-3957173 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGUGUUAAAAACCAAUGUGAUCUCUUGCUUUGGCAUUAAAGGAAGCUAGUUUAAUUACGAAAACUAGUUUCCUCUAACGUUUCAAACAAUACAUCAUGUGUCGUCGCAUCGAUGAA

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Structure

        10          20        30          40        50       
UUGUGUUAAAAACCAAU--     CUC   C    --| A   A            UAAU 
                   GUGAU   UUG UUUG  GC UUA AGGAAGCUAGUU    U
                   UACUA   AAC AAAC  UG AAU UCCUUUGAUCAA    A
AAGUAGCUACGCUGCUGUG     CAU   -    UU^ C   C            AAGC 
     110       100        90         80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

He	Wh

Mature sequence

Dsi-Mir-303_5p

mirBase accession

MIMAT0012516

Sequence

0- UUGGCAUUAAAGGAAGCUAGUU -22

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Star sequence

Dsi-Mir-303_3p*

mirBase accession

MIMAT0037362

Sequence

34- CUAGUUUCCUCUAACGUUUCAAA -57

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