MirGeneDB ID | Dsi-Mir-956-v1 |
Family name |
MIR-956 (all species) |
Seed |
UUCGAGA |
Species |
Fruit fly (Drosophila simulans) |
MiRBase ID |
|
Paralogues |
Dsi-Mir-956-v2
|
Orthologues |
Dan-Mir-956-v1
Dme-Mir-956-v1
Dmo-Mir-956-v1
Dya-Mir-956-v1
Gpa-Mir-956-v1
|
Node of Origin (locus) |
Glossinidae + Drosophilidae
|
Node of Origin (family) |
Glossinidae + Drosophilidae
|
Genome context (Drosophila_simulans.ASM75419v3.dna.toplevel) |
3L: 11468691-11468819 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGAUAUGUGCUCUUUUCCUGAUCGUUAUCGUGUUUGGAAUGGUCUCGUUAGCUAACGGAUGAGCAAGUGCUCGGCUCACUGGCCCAAAUGCAGUUUGCCCGGAGACGCCGGUUGCCCAAGCACUGAAAUGUGUAGUUUCGAGACCACUCUAAUCCAUUGCAGCAUUUUCCACAAUAUGCAAAUUCAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80 90
UUGAUAUGUGCUCUUUUCCUGAUC- AUC U-| A UU AACGGAUGAGCAAGUGCUCGGCUCACUGGCCCAAAUGCA
GUU GUG UUGGA UGGUCUCG AGCU G
CGA UAC AAUCU ACCAGAGC UUGA U
CUACUUAAACGUAUAACACCUUUUA CGU CU^ C U- UGUGUAAAGUCACGAACCCGUUGGCCGCAGAGGCCCGUU
180 170 160 150 140 130 120 110 100 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Dsi-Mir-956-v1_5p* |
mirBase accession | None |
Sequence |
0- GUGUUUGGAAUGGUCUCGUUAGCU -24
Get sequence
|
Mature sequence |
Dsi-Mir-956-v1_3p |
mirBase accession | None |
Sequence |
106- UUUCGAGACCACUCUAAUCCAUU -129
Get sequence
|