| MirGeneDB ID | Ebu-Mir-192-o1 |
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| Family name |
MIR-192 (all species) |
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| Seed |
UGACCUA |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Laf-Mir-192-P1
Pma-Mir-192-o1
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| Node of Origin (locus) |
Cyclostomata
|
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| Node of Origin (family) |
Vertebrata
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Genome context
(Eburgeri_3) |
FYBX02009777.1: 1718365-1718423 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGCAGUGAGAACACGCAGGGCAUUGGGCAAUGACCUAUGAUUUGACAGCUGGUUCCAACUCCCACCUGUCAGUUUCGUAGGUCAAAGUUCAGUGUCCAAGUGAUCAUCGUUUUUCAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAGCAGUGAGAACACGCA--- AA U-| C GUUCC
GGGCAUUGGGC UGACCUAUGA UUGACAG UG \
CCUGUGACUUG ACUGGAUGCU GACUGUC AC A
UAACUUUUUGCUACUAGUGAA AA UU^ C CCUCA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ebu-Mir-192-o1_5p |
| mirBase accession | None |
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| Sequence |
0- AUGACCUAUGAUUUGACAGCUG -22
Get sequence
|
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| Star sequence |
Ebu-Mir-192-o1_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- CCUGUCAGUUUCGUAGGUCAAAGU -59
Get sequence
|
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