MirGeneDB 2.1

MirGeneDB ID

Ebu-Mir-192-o1

Family name MIR-192 (all species)
Seed UGACCUA
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues
Orthologues Aca-Mir-192-P1  Ami-Mir-192-P1  Bta-Mir-192-P1  Cfa-Mir-192-P1  Cli-Mir-192-P1  Cmi-Mir-192-P1  Cpi-Mir-192-P1  Cpo-Mir-192-P1  Dno-Mir-192-P1  Ete-Mir-192-P1  Gga-Mir-192-P1  Gja-Mir-192-P1  Hsa-Mir-192-P1  Lch-Mir-192-P1  Mdo-Mir-192-P1  Mml-Mir-192-P1  Mmu-Mir-192-P1  Mun-Mir-192-P1  Oan-Mir-192-P1  Oan-Mir-192-P1-as  Ocu-Mir-192-P1  Pbv-Mir-192-P1  Pma-Mir-192-o1  Rno-Mir-192-P1  Spt-Mir-192-P1  Sto-Mir-192-P1  Tgu-Mir-192-P1  Xla-Mir-192-P1a  Xla-Mir-192-P1b  Xtr-Mir-192-P1 
Node of Origin (locus) Cyclostomata
Node of Origin (family) Vertebrata
Genome context
(Eburgeri_3)
FYBX02009777.1: 1718365-1718423 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCAGUGAGAACACGCAGGGCAUUGGGCAAUGACCUAUGAUUUGACAGCUGGUUCCAACUCCCACCUGUCAGUUUCGUAGGUCAAAGUUCAGUGUCCAAGUGAUCAUCGUUUUUCAAU
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Structure
        10           20        30        40         50        
CAGCAGUGAGAACACGCA---           AA          U-|      C  GUUCC 
                     GGGCAUUGGGC  UGACCUAUGA  UUGACAG UG     \
                     CCUGUGACUUG  ACUGGAUGCU  GACUGUC AC     A
UAACUUUUUGCUACUAGUGAA           AA          UU^      C  CCUCA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ebu-Mir-192-o1_5p

mirBase accessionNone
Sequence
0- AUGACCUAUGAUUUGACAGCUG -22
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Star sequence

Ebu-Mir-192-o1_3p*

mirBase accessionNone
Sequence
35- CCUGUCAGUUUCGUAGGUCAAAGU -59
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