MirGeneDB 2.1
MirGeneDB ID

Pma-Mir-192-o1

Family name MIR-192 (all species)
Seed UGACCUA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-192-P1  Ami-Mir-192-P1  Bta-Mir-192-P1  Cfa-Mir-192-P1  Cli-Mir-192-P1  Cmi-Mir-192-P1  Cpi-Mir-192-P1  Cpo-Mir-192-P1  Dno-Mir-192-P1  Ebu-Mir-192-o1  Ete-Mir-192-P1  Gga-Mir-192-P1  Gja-Mir-192-P1  Hsa-Mir-192-P1  Lch-Mir-192-P1  Mdo-Mir-192-P1  Mml-Mir-192-P1  Mmu-Mir-192-P1  Mun-Mir-192-P1  Oan-Mir-192-P1  Oan-Mir-192-P1-as  Ocu-Mir-192-P1  Pbv-Mir-192-P1  Rno-Mir-192-P1  Spt-Mir-192-P1  Sto-Mir-192-P1  Tgu-Mir-192-P1  Xla-Mir-192-P1a  Xla-Mir-192-P1b  Xtr-Mir-192-P1 
Node of Origin (locus) Cyclostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046074.1: 5108757-5108818 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAAGUCACCCAAGGCUUCGAGGCCGGGCCUUGACCUAUGAAUUGACAGCCGGUGGCCACCGCAUCUCGCCUGUCAGUUUCACAGGUCAAGCCACGGCCUCCGACCAUUUCCUCGGCCGACC
Get precursor sequence
Structure
        10          20         30        40         50          
GCAAGUCACCCAAGGCU-  -       -|  C       A    -       C  GUGGCCA 
                  UC GAGGCCG GGC UUGACCU UGAA UUGACAG CG       \
                  AG CUCCGGC CCG AACUGGA ACUU GACUGUC GC       C
CCAGCCGGCUCCUUUACC  C       A^  -       C    U       C  UCUACGC 
120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-192-o1_5p
mirBase accessionNone
Sequence 
0- UUGACCUAUGAAUUGACAGCCG -22
Get sequence
Star sequence

Pma-Mir-192-o1_3p*
mirBase accessionNone
Sequence 
39- CCUGUCAGUUUCACAGGUCAAGC -62
Get sequence