MirGeneDB ID | Eca-Mir-935-v2 |
Family name |
MIR-935 (all species) |
Seed |
CAGUUAC |
Species |
Horse (Equus caballus) |
MiRBase ID |
|
Paralogues |
Eca-Mir-935-v1
|
Orthologues |
Bta-Mir-935-v2
Cfa-Mir-935-v2
Cja-Mir-935
Dno-Mir-935-v2
Hsa-Mir-935-v2
Mml-Mir-935-v2
Mmr-Mir-935
Mmu-Mir-935-v2
Ocu-Mir-935-v2
Pab-Mir-935
Rno-Mir-935-v2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_002863925.1_EquCab3.0) |
CM009157.1: 23431175-23431234 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCUCAAGGCCGGCGGGGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCUAGCUCCCGCUCCAGC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGCUCAAGGCCGGCGG---| C G A CCC C CAUCC
GGG GCGG CGGC GUGGCGGGAGCGG CU GGC U
CCC CGCC GCCG CAUCGCCUUCGCC GA CCG C
CGACCUCGCCCUCGAUCUCG^ U - C AUU C UCUGC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Eca-Mir-935-v2_5p* |
mirBase accession | None |
Sequence |
0- AGUGGCGGGAGCGGCCCCUCGGC -23
Get sequence
|
Mature sequence |
Eca-Mir-935-v2_3p |
mirBase accession | None |
Sequence |
37- CCAGUUACCGCUUCCGCUACCGC -60
Get sequence
|