MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-935

Family name MIR-935 (all species)
Seed AGUUACC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-935-v1  Bta-Mir-935-v2  Cfa-Mir-935-v1  Cfa-Mir-935-v2  Dno-Mir-935-v1  Dno-Mir-935-v2  Eca-Mir-935-v1  Eca-Mir-935-v2  Hsa-Mir-935-v1  Hsa-Mir-935-v2  Mml-Mir-935-v1  Mml-Mir-935-v2  Mmr-Mir-935  Mmu-Mir-935-v1  Mmu-Mir-935-v2  Ocu-Mir-935-v1  Ocu-Mir-935-v2  Pab-Mir-935  Rno-Mir-935-v1  Rno-Mir-935-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021936.1: 45801642-45801701 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCUCAAGGCCGGCGGGGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCUAGCUCCCGCUCCAGC
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Structure
        10           20        30        40        50         
CUGCUCAAGGCCGGCGG---|  C    G    A             CCC  C  CCAUCC 
                    GGG GCGG CGGC GUGGCGGGAGCGG   CU GG      U
                    CCC CGCC GCCG CAUCGCCUUCGCC   GA CC      C
CGACCUCGCCCUCGAUCUCG^  U    -    C             AUU  C  GUCUGC 
.       110       100         90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-935_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUGGCGGGAGCGGCCCCUCGG -22
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Mature sequence

Cja-Mir-935_3p (predicted)
mirBase accessionNone
Sequence 
38- CAGUUACCGCUUCCGCUACCGC -60
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