MirGeneDB ID | Cja-Mir-935 |
---|---|
Family name | MIR-935 (all species) |
Seed | AGUUACC |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-935-v1 Bta-Mir-935-v2 Cfa-Mir-935-v1 Cfa-Mir-935-v2 Dno-Mir-935-v1 Dno-Mir-935-v2 Eca-Mir-935-v1 Eca-Mir-935-v2 Hsa-Mir-935-v1 Hsa-Mir-935-v2 Mml-Mir-935-v1 Mml-Mir-935-v2 Mmr-Mir-935 Mmu-Mir-935-v1 Mmu-Mir-935-v2 Ocu-Mir-935-v1 Ocu-Mir-935-v2 Pab-Mir-935 Rno-Mir-935-v1 Rno-Mir-935-v2 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021936.1: 45801642-45801701 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CUGCUCAAGGCCGGCGGGGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCUAGCUCCCGCUCCAGCGet precursor sequence |
Structure | 10 20 30 40 50 CUGCUCAAGGCCGGCGG---| C G A CCC C CCAUCC GGG GCGG CGGC GUGGCGGGAGCGG CU GG U CCC CGCC GCCG CAUCGCCUUCGCC GA CC C CGACCUCGCCCUCGAUCUCG^ U - C AUU C GUCUGC . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Cja-Mir-935_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGUGGCGGGAGCGGCCCCUCGG -22
Get sequence
|
Mature sequence | Cja-Mir-935_3p (predicted) |
mirBase accession | None |
Sequence |
38- CAGUUACCGCUUCCGCUACCGC -60
Get sequence
|