MirGeneDB ID | Ocu-Mir-935-v1 |
Family name |
MIR-935 (all species) |
Seed |
AGUUACC |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
|
Paralogues |
Ocu-Mir-935-v2
|
Orthologues |
Bta-Mir-935-v1
Cfa-Mir-935-v1
Cja-Mir-935
Dno-Mir-935-v1
Eca-Mir-935-v1
Hsa-Mir-935-v1
Mml-Mir-935-v1
Mmr-Mir-935
Mmu-Mir-935-v1
Pab-Mir-935
Rno-Mir-935-v1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
VIYN01003915.1: 22406-22465 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCUCAAGGCCGGCGGGGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCUAGCUCCCGCUCCAGC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGCUCAAGGCCGGCGG---| C G A CCC C CCAUCC
GGG GCGG CGGC GUGGCGGGAGCGG CU GG U
CCC CGCC GCCG CAUCGCCUUCGCC GA CC C
CGACCUCGCCCUCGAUCUCG^ U - C AUU C GUCUGC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ocu-Mir-935-v1_5p* |
mirBase accession | None |
Sequence |
0- AGUGGCGGGAGCGGCCCCUCGG -22
Get sequence
|
Mature sequence |
Ocu-Mir-935-v1_3p |
mirBase accession | None |
Sequence |
38- CAGUUACCGCUUCCGCUACCGC -60
Get sequence
|