Mir-935-v1

MirGeneDB ID

Eca-Mir-935-v1

Family name

MIR-935 (all species)

Seed

AGUUACC

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Eca-Mir-935-v2

Orthologues

Bta-Mir-935-v1 Cfa-Mir-935-v1 Cja-Mir-935 Dno-Mir-935-v1 Hsa-Mir-935-v1 Mml-Mir-935-v1 Mmr-Mir-935 Mmu-Mir-935-v1 Ocu-Mir-935-v1 Pab-Mir-935 Rno-Mir-935-v1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009157.1: 23431175-23431234 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGCUCAAGGCCGGCGGGGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCUAGCUCCCGCUCCAGC

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Structure

        10           20        30        40        50         
CUGCUCAAGGCCGGCGG---|  C    G    A             CCC  C  CCAUCC 
                    GGG GCGG CGGC GUGGCGGGAGCGG   CU GG      U
                    CCC CGCC GCCG CAUCGCCUUCGCC   GA CC      C
CGACCUCGCCCUCGAUCUCG^  U    -    C             AUU  C  GUCUGC 
.       110       100         90        80        70        60

Deep sequencing

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-935-v1_5p* (predicted)

mirBase accession

None

Sequence

0- AGUGGCGGGAGCGGCCCCUCGG -22

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Mature sequence

Eca-Mir-935-v1_3p

mirBase accession

None

Sequence

38- CAGUUACCGCUUCCGCUACCGC -60

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