MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-1996-P3

Family name MIR-1996 (all species)
Seed UCAAGUG
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1996-P1  Efe-Mir-1996-P2 
Orthologues Cte-Mir-1996  Dgr-Mir-1996  Snu-Mir-1996 
Node of Origin (locus) E. fetida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(Efe_combined)		 Efet.01.53477: 425-491 [-]
Precursor
(pre-Mir +30nt flank)
GAAAGGGAAGAGUGGAAGCCGAUUAGCAGUUUCAAGUGAGGUCAGAGCUGCUGUGGAUUAAUGUCAUCAGUUCAGCCGCUCUUGUCGCGCUUGACACUGUCAGUUUCAUGGCUCUUACAACGACCGC
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Structure
        10        20          30        40        50        60   
GAAAGGGAAGAGUGGAAGCC--|   AG    U       A  UC     U   GUGGAUUAAU 
                      GAUU  CAGU UCAAGUG GG  AGAGC GCU          \
                      UUGA  GUCA AGUUCGC CU  UCUCG CGA          G
CGCCAGCAACAUUCUCGGUACU^   CU    C       G  GU     C   CUUGACUACU 
     120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Mature sequence

Efe-Mir-1996-P3_5p
mirBase accessionNone
Sequence 
0- UUCAAGUGAGGUCAGAGCUGCU -22
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Star sequence

Efe-Mir-1996-P3_3p*
mirBase accessionNone
Sequence 
45- CCGCUCUUGUCGCGCUUGACAC -67
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