MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-1996-P1

Family name MIR-1996 (all species)
Seed UCAAGUG
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1996-P2  Efe-Mir-1996-P3 
Orthologues Cte-Mir-1996  Dgr-Mir-1996  Pdu-Mir-1996-o1  Snu-Mir-1996 
Node of Origin (locus) E. fetida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(Efe_combined)		 Efet.01.625385: 844-904 [+]
Precursor
(pre-Mir +30nt flank)
CGUUUUAAUGUGUUAAUGGACGUUGGGGUUCUCAAGUGAGGUCAGUGCUGCUGGGGUUGAUGACGAUGGCAGCACUGAUCCUGUUUGAAGCCCUCGACUCCACAGUCGUCAAGAUCAAGCA
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Structure
        10           20         30        40        50          
CGUUUUAAUGUGUUAAU---|  C    -     C    GU A             GGGGUUG 
                    GGA GUUG GGGUU UCAA  G GGUCAGUGCUGCU       \
                    CCU CAGC CCCGA AGUU  U CUAGUCACGACGG       A
ACGAACUAGAACUGCUGACA^  -    U     -    UG C             UAGCAGU 
 .       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Efe-Mir-1996-P1_5p
mirBase accessionNone
Sequence 
0- CUCAAGUGAGGUCAGUGCUGCU -22
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Star sequence

Efe-Mir-1996-P1_3p*
mirBase accessionNone
Sequence 
39- CAGCACUGAUCCUGUUUGAAGC -61
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