| MirGeneDB ID | Pdu-Mir-1996-o1 |
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| Family name |
MIR-1996 (all species) |
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| Seed |
UCAAGUG |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
Pdu-Mir-1996-o2
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| Orthologues |
Cte-Mir-1996
Dgr-Mir-1996
Efe-Mir-1996-P1
Snu-Mir-1996
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| Node of Origin (locus) |
P. dumerilii
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| Node of Origin (family) |
Sipuncula + Pleistoannelida
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000001.1: 189983201-189983260 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAGGCAGAUGCGUUUUGGUAUGGCGCGGGAAUCAAGUGAGGUCAGAUCUUGGGUGACAUGGGGCGCCAGGGUCAUGGUCUCAAUUGACCCCCGAGCUUAUACGUUCCACCAUUCAACCAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAGGCAGAUGCGUUUUG- - G AA G GU -| GUGACA
GUAU GGC CGGG UCAA UGAG CA GAUCUUGG \
CAUA UCG GCCC AGUU ACUC GU CUGGGACC U
CACCAACUUACCACCUUG U A CC A UG A^ GCGGGG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Mature sequence |
Pdu-Mir-1996-o1_5p |
| mirBase accession | None |
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| Sequence |
0- AUCAAGUGAGGUCAGAUCUUGG -22
Get sequence
|
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| Star sequence |
Pdu-Mir-1996-o1_3p* |
| mirBase accession | None |
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| Sequence |
37- AGGGUCAUGGUCUCAAUUGACCC -60
Get sequence
|
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