| MirGeneDB ID | Snu-Mir-1996 |
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| Family name |
MIR-1996 (all species) |
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| Seed |
UCAAGUG |
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| Species |
Peanut worm (Sipunculus nudus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cte-Mir-1996
Cte-Mir-1996-as
Dgr-Mir-1996
Efe-Mir-1996-P1
Efe-Mir-1996-P2
Efe-Mir-1996-P3
Pdu-Mir-1996-o1
Pdu-Mir-1996-o2
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| Node of Origin (locus) |
Sipuncula + Pleistoannelida
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| Node of Origin (family) |
Sipuncula + Pleistoannelida
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Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049318.1: 59085298-59085356 [+]
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Precursor
(pre-Mir +30nt flank) |
GUCAUAUAAACGUUACUGUGAGUGGCCAGGAUCAAGUGAGGUCAGUGCUGCUGUGUGUAAGAUUCAGGAGUACUGGUCUCAAGUGAUCCCGUCCUACUCAUCUGACGACUUAGUUCAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUCAUAUAAACGUUACU- CCA-| AG GU G GUGUGU
GUGAGUGG GGAUCA UGAG CAGUGCU CU \
UACUCAUC CCUAGU ACUC GUCAUGA GA A
UAACUUGAUUCAGCAGUC CUGC^ GA UG G CUUAGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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|
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| Mature sequence |
Snu-Mir-1996_5p |
| mirBase accession | None |
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| Sequence |
0- AUCAAGUGAGGUCAGUGCUGCU -22
Get sequence
|
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| Star sequence |
Snu-Mir-1996_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
37- GAGUACUGGUCUCAAGUGAUCC -59
Get sequence
|
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