MirGeneDB 3.0
MirGeneDB ID

Snu-Mir-1996

Family name MIR-1996 (all species)
Seed UCAAGUG
Species Peanut worm (Sipunculus nudus)
MiRBase ID
Paralogues
Orthologues Cte-Mir-1996  Cte-Mir-1996-as  Dgr-Mir-1996  Efe-Mir-1996-P1  Efe-Mir-1996-P2  Efe-Mir-1996-P3  Pdu-Mir-1996-o1  Pdu-Mir-1996-o2 
Node of Origin (locus) Sipuncula + Pleistoannelida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)		 CM049318.1: 59085298-59085356 [+]
Precursor
(pre-Mir +30nt flank)
GUCAUAUAAACGUUACUGUGAGUGGCCAGGAUCAAGUGAGGUCAGUGCUGCUGUGUGUAAGAUUCAGGAGUACUGGUCUCAAGUGAUCCCGUCCUACUCAUCUGACGACUUAGUUCAAU
Get precursor sequence
Structure
        10         20         30        40        50         
GUCAUAUAAACGUUACU-        CCA-|     AG    GU       G  GUGUGU 
                  GUGAGUGG    GGAUCA  UGAG  CAGUGCU CU      \
                  UACUCAUC    CCUAGU  ACUC  GUCAUGA GA      A
UAACUUGAUUCAGCAGUC        CUGC^     GA    UG       G  CUUAGA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Snu-Mir-1996_5p
mirBase accessionNone
Sequence 
0- AUCAAGUGAGGUCAGUGCUGCU -22
Get sequence
Star sequence

Snu-Mir-1996_3p* (predicted)
mirBase accessionNone
Sequence 
37- GAGUACUGGUCUCAAGUGAUCC -59
Get sequence