| MirGeneDB ID | Pdu-Mir-1996-o2 |
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| Family name |
MIR-1996 (all species) |
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| Seed |
UCAAGUG |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
Pdu-Mir-1996-o1
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| Orthologues |
Cte-Mir-1996
Dgr-Mir-1996
Efe-Mir-1996-P2
Snu-Mir-1996
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| Node of Origin (locus) |
P. dumerilii
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| Node of Origin (family) |
Sipuncula + Pleistoannelida
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000001.1: 189982418-189982474 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUUGGAGUGCUCCCAAUGUGUUUGGUGUGUCUCAAGUGAGGUCAGUGCUACUGUUCUUGAACCAGGGGCACUGCCCUCAACUGAAGCACUCCCUGACACACCCUCAUCUCAUCACCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUUGGAGUGCUCCCAAU- U-| U UC AG U UA GUUCU
GUGUU GG GUG UCA UGAGG CAGUGC CU \
CACAG CC CAC AGU ACUCC GUCACG GA U
ACCACUACUCUACUCCCA UC^ U GA CA C GG CCAAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Mature sequence |
Pdu-Mir-1996-o2_5p |
| mirBase accession | None |
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| Sequence |
0- CUCAAGUGAGGUCAGUGCUACU -22
Get sequence
|
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| Star sequence |
Pdu-Mir-1996-o2_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- GGGCACUGCCCUCAACUGAAGC -57
Get sequence
|
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