| MirGeneDB ID | Efe-Mir-1998-P1 |
|---|
| Family name |
MIR-1998 (all species) |
|---|
| Seed |
UGAACGC |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-1998-P2
|
|---|
| Orthologues |
Dgr-Mir-1998
Pdu-Mir-1998
Snu-Mir-1998
|
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| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Sipuncula + Pleistoannelida
|
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Genome context
(Efe_combined) |
Efet.01.58205: 4197-4257 [-]
|
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Precursor
(pre-Mir +30nt flank) |
CGAGGGUCUGGAAUUCAAUGUCUGUCGCUGACGUUCAUGUCUGUUUUCAGACUGUUCAGUUCAAACUAGUUGAACGCAGAGAUGUACGUCAUUGGNNNNNNNNNNNNNNNNNNNNNNNNNN
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGAGGGUCUGGAAUUCAAUGUCUGU--| C U G U A GUUCAG
CG UGACGU CAU UCUGU UUCAG CU U
GU ACUGCA GUA AGACG AAGUU GA U
NNNNNNNNNNNNNNNNNNNNNNNNNNG^ U U G C - UCAAAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Efe-Mir-1998-P1_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- ACGUUCAUGUCUGUUUUCAGACU -23
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-1998-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UUGAACGCAGAGAUGUACGUCA -61
Get sequence
|
|---|
