| MirGeneDB ID | Pdu-Mir-1998 |
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| Family name |
MIR-1998 (all species) |
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| Seed |
UGAACGC |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cte-Mir-1998-v1
Cte-Mir-1998-v2
Dgr-Mir-1998
Efe-Mir-1998-P1
Efe-Mir-1998-P2
Snu-Mir-1998
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| Node of Origin (locus) |
Sipuncula + Pleistoannelida
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| Node of Origin (family) |
Sipuncula + Pleistoannelida
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000002.1: 43820343-43820398 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GACGUAAGAAGUGACCACUUGUCCCAAAUGAUGUAUAUCCCUACGUCCACACUUCCCUCUCCAGUUGAACGCAGAGAUGUACAUCAUCCAUUGGACGAACAGCCUCACGUGACUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GACGUAAGAAGUGACCAC CAA--| C A C C UCCC
UUGUCC AUGAUGUAUAUC CU CGU CA ACU \
AGCAGG UACUACAUGUAG GA GCA GU UGA U
GGUCAGUGCACUCCGACA UUACC^ A C A - CCUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Star sequence |
Pdu-Mir-1998_5p* |
| mirBase accession | None |
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| Sequence |
0- AUGUAUAUCCCUACGUCCACACU -23
Get sequence
|
|---|
| Mature sequence |
Pdu-Mir-1998_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UUGAACGCAGAGAUGUACAUCA -56
Get sequence
|
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