| MirGeneDB ID | Efe-Mir-1998-P2 |
|---|
| Family name |
MIR-1998 (all species) |
|---|
| Seed |
UGAACGC |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Efe-Mir-1998-P1
|
|---|
| Orthologues |
Dgr-Mir-1998
Pdu-Mir-1998
Snu-Mir-1998
|
|---|
| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Sipuncula + Pleistoannelida
|
|---|
Genome context
(Efe_combined) |
Efet.01.35851: 446-506 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
NNNNNNNNNNNNNNNNUCCUGCAGACGACGAUGUACACAUCUCCAAGUUCAGACUUUGAACUGUAGAAGUUGAACGCAGAGAUGUACAUCGCCGACUCAGCNAUGCAUACAUGUCUUCUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
NNNNNNNNNNNNNNNNUC---| C A A CA CAA A UUGAA
CUG AG CG CGAUGUACA UCUC GUUCAG CU C
GAC UC GC GCUACAUGU AGAG CAAGUU GA U
CGUCUUCUGUACAUACGUANC^ - A C -- ACG - AGAUG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Efe-Mir-1998-P2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AUGUACACAUCUCCAAGUUCAGACU -25
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-1998-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UUGAACGCAGAGAUGUACAUCG -61
Get sequence
|
|---|
