| MirGeneDB ID | Snu-Mir-1998 |
|---|
| Family name |
MIR-1998 (all species) |
|---|
| Seed |
UUGAACG |
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| Species |
Peanut worm (Sipunculus nudus) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Cte-Mir-1998-v1
Cte-Mir-1998-v2
Dgr-Mir-1998
Efe-Mir-1998-P1
Efe-Mir-1998-P2
Pdu-Mir-1998
|
|---|
| Node of Origin (locus) |
Sipuncula + Pleistoannelida
|
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| Node of Origin (family) |
Sipuncula + Pleistoannelida
|
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Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049312.1: 23149739-23149794 [+]
|
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Precursor
(pre-Mir +30nt flank) |
AGAAGAAGUAAAAUAUCCCAGUUCUGCUCAUGUGUAUCCCUGCAUUCAUAUAUAACUAUCAAAAGUUGAACGCAGAGAUGUACAUCAGCAUGACUGGGCUGAACAACGCCGAAUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGAAGAAGUAAAAUAUC--| C C C A UAUAUAAC
CCAGUU UGCU AUGUGUAUC CUGC UUCA U
GGUCAG ACGA UACAUGUAG GACG AAGU A
GGUAAGCCGCAACAAGUCG^ U C A C UGAAAACU
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Snu-Mir-1998_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UGUGUAUCCCUGCAUUCAUAUA -22
Get sequence
|
|---|
| Mature sequence |
Snu-Mir-1998_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
34- GUUGAACGCAGAGAUGUACAUC -56
Get sequence
|
|---|
