MirGeneDB 3.0

MirGeneDB ID

Cte-Mir-1998-v1

Family name MIR-1998 (all species)
Seed UUGAACG
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-1998
Paralogues Cte-Mir-1998-v2 
Orthologues Dgr-Mir-1998  Pdu-Mir-1998  Snu-Mir-1998 
Node of Origin (locus) Sipuncula + Pleistoannelida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_24: 172651-172724 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-1998-v1)
Mir-2000 CAPTEscaffold_24: 172461-172517 [-] Ensembl
Mir-1998-v2 CAPTEscaffold_24: 172650-172725 [-] Ensembl
Mir-1998-v1 CAPTEscaffold_24: 172651-172724 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUACCACGUACAUCUGCUGGGUCUGGUGGUGUAUAUUUCCGCGUCCAGACUCUUUGUGGUCCUGCAAUGGCAAAUUAUCGAGUUGAACGCAGAGAUGUACAUCACCAACCGCAGACCAAAUCAACACCCUAUC
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Structure
        10          20         30        40        50        60       
UGUACCACGUACAUCUG--   -|  C                C    CCA     UUUGUGGUCCUGC 
                   CUG GGU UGGUGGUGUAUAUUUC GCGU   GACUC             \
                   GAC CCA ACCACUACAUGUAGAG CGCA   UUGAG             A
CUAUCCCACAACUAAACCA   G^  -                A    AG-     CUAUUAAACGGUA 
  130       120       110        100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ea Fe Fe La La Ma Ma To
Star sequence

Cte-Mir-1998-v1_5p*

mirBase accessionNone
Sequence
0- UGUAUAUUUCCGCGUCCAGACUC -23
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Mature sequence

Cte-Mir-1998-v1_3p

mirBase accessionMIMAT0009709
Sequence
52- GUUGAACGCAGAGAUGUACAUC -74
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