MirGeneDB 3.0

MirGeneDB ID

Efe-Mir-2000-P1

Family name MIR-2000 (all species)
Seed AAGUCUU
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-2000-P2 
Orthologues Cte-Mir-2000  Snu-Mir-2000 
Node of Origin (locus) E. fetida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(Efe_combined)
Efet.01.58205: 3094-3153 [-]
Precursor
(pre-Mir +30nt flank)
GGCGCUUCAAAAAUUCAGACAAUUUCCUGGCUGAAAGUAUCGCUAGGCUUUAAACUGACCUUCAAAUUAAAGUCUUCUAUACUUUUAGUCGGGUGACAAAACUGAACUUCACCGGAUAGU
Get precursor sequence
Structure
        10        20          30        40        50          
GGCGCUUCAAAAAUUCAGACAAUUU--|              CGCU         ACUGAC 
                           CCUGGCUGAAAGUAU    AGGCUUUAA      \
                           GGGCUGAUUUUCAUA    UCUGAAAUU      C
UGAUAGGCCACUUCAAGUCAAAACAGU^              UCU-         AAACUU 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Efe-Mir-2000-P1_5p*

mirBase accessionNone
Sequence
0- CUGAAAGUAUCGCUAGGCUUUAA -23
Get sequence
Mature sequence

Efe-Mir-2000-P1_3p

mirBase accessionNone
Sequence
38- AAAGUCUUCUAUACUUUUAGUC -60
Get sequence