MirGeneDB ID | Efe-Mir-2000-P1 |
Family name |
MIR-2000 (all species) |
Seed |
AAGUCUU |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-2000-P2
|
Orthologues |
Cte-Mir-2000
Snu-Mir-2000
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Sipuncula + Pleistoannelida
|
Genome context (Efe_combined) |
Efet.01.58205: 3094-3153 [-]
|
Precursor (pre-Mir +30nt flank) |
GGCGCUUCAAAAAUUCAGACAAUUUCCUGGCUGAAAGUAUCGCUAGGCUUUAAACUGACCUUCAAAUUAAAGUCUUCUAUACUUUUAGUCGGGUGACAAAACUGAACUUCACCGGAUAGU
Get precursor sequence
|
Structure | 10 20 30 40 50
GGCGCUUCAAAAAUUCAGACAAUUU--| CGCU ACUGAC
CCUGGCUGAAAGUAU AGGCUUUAA \
GGGCUGAUUUUCAUA UCUGAAAUU C
UGAUAGGCCACUUCAAGUCAAAACAGU^ UCU- AAACUU
. 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Efe-Mir-2000-P1_5p* |
mirBase accession | None |
Sequence |
0- CUGAAAGUAUCGCUAGGCUUUAA -23
Get sequence
|
Mature sequence |
Efe-Mir-2000-P1_3p |
mirBase accession | None |
Sequence |
38- AAAGUCUUCUAUACUUUUAGUC -60
Get sequence
|