| MirGeneDB ID | Snu-Mir-2000 |
|---|
| Family name |
MIR-2000 (all species) |
|---|
| Seed |
AAGUCUU |
|---|
| Species |
Peanut worm (Sipunculus nudus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
Cte-Mir-2000
Efe-Mir-2000-P1
Efe-Mir-2000-P2
Pdu-Mir-2000-v1
Pdu-Mir-2000-v2
|
|---|
| Node of Origin (locus) |
Sipuncula + Pleistoannelida
|
|---|
| Node of Origin (family) |
Sipuncula + Pleistoannelida
|
|---|
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049312.1: 23150774-23150830 [+]
|
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Precursor
(pre-Mir +30nt flank) |
CAUAACUGAAGCAAUGCUGGAUUAUUCGCUCUAAAAGUACGGAAGGCUUUAAUCUUAGUACACUUAAAGUCUUCACUACUUUUAGUUCGGUGGUCCUACAACAACCAUGACAAUAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAUAACUGAAGCAAUGCU---| U CU CG AUCUUA
GGAUUAU CG CUAAAAGUA GAAGGCUUUA \
CCUGGUG GC GAUUUUCAU CUUCUGAAAU G
AAAUAACAGUACCAACAACAU^ - UU CA UCACAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Snu-Mir-2000_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CUAAAAGUACGGAAGGCUUUA -21
Get sequence
|
|---|
| Mature sequence |
Snu-Mir-2000_3p |
| mirBase accession | None |
|---|
| Sequence |
35- AAAGUCUUCACUACUUUUAGUU -57
Get sequence
|
|---|
