MirGeneDB ID | Pdu-Mir-2000-v1 |
Family name |
MIR-2000 (all species) |
Seed |
AAGUCUU |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
Pdu-Mir-2000-v2
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Orthologues |
Cte-Mir-2000
Snu-Mir-2000
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Node of Origin (locus) |
Sipuncula + Pleistoannelida
|
Node of Origin (family) |
Sipuncula + Pleistoannelida
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000002.1: 43826993-43827050 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCAUCUACUAAUAAAUCCGUGUUUCUUGACUAAAAGUAUUGAAGGCUUUAAGUCAAAUCUCUGUUAAAGUCUUCACUACUUUUAGUUUGGAAACGCACCCUUAACGUCACGGCGCGA
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCAUCUACUAAUAAAUCC--| U U AGUCAA
GUGUUUCU GACUAAAAGUA UGAAGGCUUUA A
CGCAAAGG UUGAUUUUCAU ACUUCUGAAAU U
AGCGCGGCACUGCAAUUCCCA^ U C UGUCUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Star sequence |
Pdu-Mir-2000-v1_5p* |
mirBase accession | None |
Sequence |
0- CUAAAAGUAUUGAAGGCUUUA -21
Get sequence
|
Mature sequence |
Pdu-Mir-2000-v1_3p |
mirBase accession | None |
Sequence |
36- AAAGUCUUCACUACUUUUAGUU -58
Get sequence
|