MirGeneDB 3.0

MirGeneDB ID

Pdu-Mir-2000-v1

Family name MIR-2000 (all species)
Seed AAGUCUU
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-2000-v2 
Orthologues Cte-Mir-2000  Snu-Mir-2000 
Node of Origin (locus) Sipuncula + Pleistoannelida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)
JAPTHN010000002.1: 43826993-43827050 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACCAUCUACUAAUAAAUCCGUGUUUCUUGACUAAAAGUAUUGAAGGCUUUAAGUCAAAUCUCUGUUAAAGUCUUCACUACUUUUAGUUUGGAAACGCACCCUUAACGUCACGGCGCGA
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Structure
        10          20        30        40        50        
ACCAUCUACUAAUAAAUCC--|       U           U           AGUCAA 
                     GUGUUUCU GACUAAAAGUA UGAAGGCUUUA      A
                     CGCAAAGG UUGAUUUUCAU ACUUCUGAAAU      U
AGCGCGGCACUGCAAUUCCCA^       U           C           UGUCUC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-2000-v1_5p*

mirBase accessionNone
Sequence
0- CUAAAAGUAUUGAAGGCUUUA -21
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Mature sequence

Pdu-Mir-2000-v1_3p

mirBase accessionNone
Sequence
36- AAAGUCUUCACUACUUUUAGUU -58
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