| MirGeneDB ID | Pdu-Mir-2000-v2 |
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| Family name |
MIR-2000 (all species) |
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| Seed |
GACUAAA |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
Pdu-Mir-2000-v1
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| Orthologues |
Cte-Mir-2000
Snu-Mir-2000
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| Node of Origin (locus) |
Sipuncula + Pleistoannelida
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| Node of Origin (family) |
Sipuncula + Pleistoannelida
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000002.1: 43826990-43827053 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACUACCAUCUACUAAUAAAUCCGUGUUUCUUGACUAAAAGUAUUGAAGGCUUUAAGUCAAAUCUCUGUUAAAGUCUUCACUACUUUUAGUUUGGAAACGCACCCUUAACGUCACGGCGCGAGAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
ACUACCAUCUACUAAUAAAUCC--| U U UAAGUCAA
GUGUUUCU GACUAAAAGUA UGAAGGCUU A
CGCAAAGG UUGAUUUUCAU ACUUCUGAA U
GAGAGCGCGGCACUGCAAUUCCCA^ U C AUUGUCUC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Mature sequence |
Pdu-Mir-2000-v2_5p |
| mirBase accession | None |
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| Sequence |
0- UGACUAAAAGUAUUGAAGGCUU -22
Get sequence
|
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| Star sequence |
Pdu-Mir-2000-v2_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- GUCUUCACUACUUUUAGUUUGG -64
Get sequence
|
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