| MirGeneDB ID | Efe-Mir-2000-P2 |
|---|
| Family name |
MIR-2000 (all species) |
|---|
| Seed |
AAGUCUU |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
|---|
| Paralogues |
Efe-Mir-2000-P1
|
|---|
| Orthologues |
Cte-Mir-2000
Snu-Mir-2000
|
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| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Sipuncula + Pleistoannelida
|
|---|
Genome context
(Efe_combined) |
Efet.01.1442459: 57-114 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UACAGGUGCCAAUUUGACACAAAUUCCUGUCUAAAAGUACAGCAGGCUUUAAGUAUAUGCAACGUUAAAGUCUUCUCUACUUUUAGUUAGGUUUUGAACGCGACGUCUCUGGCACAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UACAGGUGCCAAUUUGACA---| UU U C C GUAUA
CAAA CCUG CUAAAAGUA AG AGGCUUUAA U
GUUU GGAU GAUUUUCAU UC UCUGAAAUU G
CUACACGGUCUCUGCAGCGCAA^ U- U C U GCAAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Efe-Mir-2000-P2_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CUAAAAGUACAGCAGGCUUUAA -22
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-2000-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
36- AAAGUCUUCUCUACUUUUAGUU -58
Get sequence
|
|---|
