| MirGeneDB ID | Efe-Mir-2689-P2 |
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| Family name |
MIR-2689 (all species) |
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| Seed |
AUCCUGG |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
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| Paralogues |
Efe-Mir-2689-P1
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| Orthologues |
Cte-Mir-2689
Pdu-Mir-2689
Snu-Mir-2689
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| Node of Origin (locus) |
E. fetida
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| Node of Origin (family) |
Sipuncula + Pleistoannelida
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Genome context
(Efe_combined) |
Efet.01.57033: 882-945 [+]
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Precursor
(pre-Mir +30nt flank) |
GAGCUUCUUUCGUUGGGUGUCUGGCGUUCAUGGUGCUUGUCCCAGUGGUCCGCGAUCGUUUCAAUACAGCACGAAUCCUGGGAGCAAGUGCCAGAAUCCAGGCACAAGUCUACAAGAGUGCUAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAGCUUCUUUCGUUGGG---| C A UG - U C CGAUCGUUU
UGUCUGG GUUC UGG CUUG UCCCAG GGU CG \
ACGGACC UAAG ACC GAAC AGGGUC CUA GC C
UAUCGUGAGAACAUCUGAAC^ - - GU G - A ACGACAUAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Efe-Mir-2689-P2_5p* |
| mirBase accession | None |
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| Sequence |
0- UGGUGCUUGUCCCAGUGGUCCG -22
Get sequence
|
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| Mature sequence |
Efe-Mir-2689-P2_3p |
| mirBase accession | None |
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| Sequence |
43- AAUCCUGGGAGCAAGUGCCAG -64
Get sequence
|
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