| MirGeneDB ID | Pdu-Mir-2689 |
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| Family name |
MIR-2689 (all species) |
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| Seed |
AUCCUGG |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cte-Mir-2689
Efe-Mir-2689-P1
Efe-Mir-2689-P2
Snu-Mir-2689
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| Node of Origin (locus) |
Sipuncula + Pleistoannelida
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| Node of Origin (family) |
Sipuncula + Pleistoannelida
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000049.1: 2560195-2560254 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAUGCAAGACUAAAGCCAUGUGAUUUCAGUGCAUUCGCAUGUCUGGAUGCAAUUACAUUUGCAUUUGUAUCCUGGCCUGCAAGUGCACAAACUCACUGGCGACGCUGCAUAUAAGAGGU
Get precursor sequence
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| Structure | 10 20 30 40 50
AGAUGCAAGACUAAAGC----| U UUUCA C U U AUUACA
CA GUGA GUGCAUU GCA GUC GGAUGCA U
GU CACU CACGUGA CGU CGG CCUAUGU U
UGGAGAAUAUACGUCGCAGCG^ - CAAA- A C U UUACGU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Star sequence |
Pdu-Mir-2689_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- UGCAUUCGCAUGUCUGGAUGCA -22
Get sequence
|
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| Mature sequence |
Pdu-Mir-2689_3p |
| mirBase accession | None |
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| Sequence |
38- UAUCCUGGCCUGCAAGUGCACA -60
Get sequence
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