| MirGeneDB ID | Esc-Mir-12505 |
|---|
| Family name |
MIR-12505 (all species) |
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| Seed |
GGAACAU |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Npo-Mir-12505
Obi-Mir-12505
Ovu-Mir-12505
|
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| Node of Origin (locus) |
Cephalopoda
|
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| Node of Origin (family) |
Cephalopoda
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-8_pre_SRIE01019391.1:11446582-11446725: 44-101 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAAUAUUUAUUCGAGAGCUCAGUUCAAUCCCGGGGCCCCUUAAGCUCCGUGUUUUGUCGAUCGUGCGGAACAUAAGGGCCCCUGGGAUUGUGUGCGGCCAGCCAGCAAACAGUUGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGAAUAUUUAUUCGAGA-----| U GUU C AGC GUUUUG
GC CA CAAUCCCGGGG CCCUUA UCCGU U
CG GU GUUAGGGUCCC GGGAAU AGGCG C
AAGUUGACAAACGACCGACCGG^ U --- C ACA UGCUAG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Esc-Mir-12505_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CCGGGGCCCCUUAAGCUCCGUG -22
Get sequence
|
|---|
| Mature sequence |
Esc-Mir-12505_3p |
| mirBase accession | None |
|---|
| Sequence |
36- CGGAACAUAAGGGCCCCUGGGA -58
Get sequence
|
|---|
