MirGeneDB 3.0

MirGeneDB ID

Ovu-Mir-12505

Family name MIR-12505 (all species)
Seed GGAACAU
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues
Orthologues Esc-Mir-12505  Npo-Mir-12505  Obi-Mir-12505 
Node of Origin (locus) Cephalopoda
Node of Origin (family) Cephalopoda
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01025595.1: 233020-233077 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAUGUUUUAUCGAGAGCCCUGUUCAAUUCCGGGGCCCCUUAAGGUCCGUGUUGUUGAAAAAUUACGGAACAUAAGGGCCCCUGGGAUUGUACAAGGCCUUUCAACAACGUAAGUGU
Get precursor sequence
Structure
        10          20        30        40        50        
AAAAUGUUUUAUCGAGA--|  C   U           C      AGG      UUGUU 
                   GCC UGU CAAUUCCGGGG CCCUUA   UCCGUG     G
                   CGG ACA GUUAGGGUCCC GGGAAU   AGGCAU     A
UGUGAAUGCAACAACUUUC^  A   U           C      ACA      UAAAA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ax Ce Fr He In Op Op Pe Po Re Sk St Su Su Te Ve Vi Wh
Star sequence

Ovu-Mir-12505_5p* (predicted)

mirBase accessionNone
Sequence
0- CCGGGGCCCCUUAAGGUCCGUGU -23
Get sequence
Mature sequence

Ovu-Mir-12505_3p

mirBase accessionNone
Sequence
36- CGGAACAUAAGGGCCCCUGGGA -58
Get sequence