MirGeneDB 3.0

MirGeneDB ID

Npo-Mir-12505

Family name MIR-12505 (all species)
Seed GGAACAU
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues
Orthologues Esc-Mir-12505  Obi-Mir-12505  Ovu-Mir-12505 
Node of Origin (locus) Cephalopoda
Node of Origin (family) Cephalopoda
Genome context
(GCA_018389105_NPO)
JACATO010001118.1: 124861-124918 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGAGCAGACUCAGCCGCUUACCUCGUCCCCGGGGCCCUUUAUGCUCCGUACUAUUUCAGAGAUACGGAACAUAAUGGCCCCUGGGAACAGGGUGAGUCAUUCGUCGUUAAUACCCG
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Structure
        10          20         30        40        50        
GGAGAGCAGACUCAGCC--       UC -|   C      CU     C      CUAUU 
                   GCUUACC  G UCCC GGGGCC  UUAUG UCCGUA     U
                   UGAGUGG  C AGGG CCCCGG  AAUAC AGGCAU     C
GCCCAUAAUUGCUGCUUAC       GA A^   U      U-     A      AGAGA 
      110       100        90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Npo-Mir-12505_5p* (predicted)

mirBase accessionNone
Sequence
0- CCGGGGCCCUUUAUGCUCCGUAC -23
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Mature sequence

Npo-Mir-12505_3p (predicted)

mirBase accessionNone
Sequence
36- CGGAACAUAAUGGCCCCUGGGA -58
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