MirGeneDB ID | Npo-Mir-12505 |
---|---|
Family name | MIR-12505 (all species) |
Seed | GGAACAU |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | |
Orthologues | Esc-Mir-12505 Obi-Mir-12505 Ovu-Mir-12505 |
Node of Origin (locus) | Cephalopoda |
Node of Origin (family) | Cephalopoda |
Genome context (GCA_018389105_NPO) |
JACATO010001118.1: 124861-124918 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | GGAGAGCAGACUCAGCCGCUUACCUCGUCCCCGGGGCCCUUUAUGCUCCGUACUAUUUCAGAGAUACGGAACAUAAUGGCCCCUGGGAACAGGGUGAGUCAUUCGUCGUUAAUACCCGGet precursor sequence |
Structure | 10 20 30 40 50 GGAGAGCAGACUCAGCC-- UC -| C CU C CUAUU GCUUACC G UCCC GGGGCC UUAUG UCCGUA U UGAGUGG C AGGG CCCCGG AAUAC AGGCAU C GCCCAUAAUUGCUGCUUAC GA A^ U U- A AGAGA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Npo-Mir-12505_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CCGGGGCCCUUUAUGCUCCGUAC -23
Get sequence
|
Mature sequence | Npo-Mir-12505_3p (predicted) |
mirBase accession | None |
Sequence |
36- CGGAACAUAAUGGCCCCUGGGA -58
Get sequence
|