| MirGeneDB ID | Obi-Mir-12505 |
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| Family name |
MIR-12505 (all species) |
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| Seed |
GGAACAU |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Esc-Mir-12505
Npo-Mir-12505
Ovu-Mir-12505
|
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| Node of Origin (locus) |
Cephalopoda
|
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| Node of Origin (family) |
Cephalopoda
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Genome context
(PRJNA270931_OBI) |
KQ421854: 392298-392355 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAAUGUUUUAUCGGGAGCCCUGUUCAAUUCCGGGGCCCCUUAAGGUCCGUGUUGUUGAAAAAUUACGGAACAUAAGGGCCCCUGGGAUUGUACAAGGCCUUUCAACAACGUAUAGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAAUGUUUUAUCGGGA--| C U C AGG UUGUU
GCC UGU CAAUUCCGGGG CCCUUA UCCGUG G
CGG ACA GUUAGGGUCCC GGGAAU AGGCAU A
GUGAUAUGCAACAACUUUC^ A U C ACA UAAAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Obi-Mir-12505_5p* |
| mirBase accession | None |
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| Sequence |
0- CCGGGGCCCCUUAAGGUCCGUG -22
Get sequence
|
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| Mature sequence |
Obi-Mir-12505_3p |
| mirBase accession | None |
|---|
| Sequence |
36- CGGAACAUAAGGGCCCCUGGGA -58
Get sequence
|
|---|
