MirGeneDB ID | Esc-Mir-12509 |
Family name |
MIR-12509 (all species) |
Seed |
UUGGCAU |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Npo-Mir-12509
Obi-Mir-12509
Ovu-Mir-12509
|
Node of Origin (locus) |
Cephalopoda
|
Node of Origin (family) |
Cephalopoda
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-12_pre_SRIE01012209.1:245987-246131: 45-101 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACUACAGAAGAUACCCGGCUGGAAGGUGUGUUUGGCAUGGCAACCGCUUUGUGUCUACGUCAUCACUAGUCGUUGACAUGCGCAACACGUACUCCCAGACAUUGUACAUCGUGUUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACUACAGAAGAUACCCGG- A GU-| U - G C UU GUCUA
CUGG AG GUGUU G GCAUG CAAC GCU GU C
GACC UC CACAA C CGUAC GUUG UGA CA G
CUUUGUGCUACAUGUUACA C AUG^ - G A C U- CUACU
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Esc-Mir-12509_5p |
mirBase accession | None |
Sequence |
0- UUUGGCAUGGCAACCGCUUUGU -22
Get sequence
|
Star sequence |
Esc-Mir-12509_3p* |
mirBase accession | None |
Sequence |
35- CUAGUCGUUGACAUGCGCAACA -57
Get sequence
|