MirGeneDB 3.0

MirGeneDB ID

Ovu-Mir-12509

Family name MIR-12509 (all species)
Seed UUGGCAU
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues
Orthologues Esc-Mir-12509  Npo-Mir-12509  Obi-Mir-12509 
Node of Origin (locus) Cephalopoda
Node of Origin (family) Cephalopoda
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01047956.1: 61366-61423 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUUAUUGACAAAAGAGCUUGCGUGUAUGUUUGGCAUGGCAACCGCUUUGUGUAUAAGGCAUCACUAGUCGUUGACAUGCGCAAUACGUACGCGUAGACAUCGUACAGCCGAGCAAU
Get precursor sequence
Structure
        10         20        30          40        50        
UGGUUAUUGACAAAAGAGC-            -   -|    G    C   UU  GUAUA 
                    UUGCGUGUAUGU UUG GCAUG CAAC GCU  GU     A
                    GAUGCGCAUGCA AAC CGUAC GUUG UGA  CA     G
UAACGAGCCGACAUGCUACA            U   G^    A    C   U-  CUACG 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Ax Ce Fr He In Op Op Pe Po Re Sk St Su Su Te Ve Vi Wh
Mature sequence

Ovu-Mir-12509_5p

mirBase accessionNone
Sequence
0- UUUGGCAUGGCAACCGCUUUGU -22
Get sequence
Star sequence

Ovu-Mir-12509_3p*

mirBase accessionNone
Sequence
35- CUAGUCGUUGACAUGCGCAAUAC -58
Get sequence