MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-728-P2

Family name MIR-728 (all species)
Seed AAUGUAG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-728b
Paralogues Gmo-Mir-728-P1 
Orthologues Loc-Mir-728  Mal-Mir-728-P2  Tni-Mir-728-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Neopterygii
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_3398: 327629-327691 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-728-P2)
Mir-727-P2 GeneScaffold_3398: 325708-325773 [+] UCSC Ensembl
Mir-728-P2 GeneScaffold_3398: 327629-327691 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGUCAUGCAGGUAUUUGCAUCUCUUGAGAAAAUGUAGUAGACUAUAAGUAUACAUGAAAAUGCAGGGAGUAUACUAAGUACACUAUGUUUAAUCAAGGGACGCCACUUCAGAGGGAGACGUG
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Structure
        10          20        30        40        50        60  
UCGUCAUGCAGGUAUUU--| A        GA         AG   AUA       AUGAAAA 
                   GC UCUCUUGA  AAAUGUAGU  ACU   AGUAUAC       \
                   CG AGGGAACU  UUUGUAUCA  UGA   UCAUAUG       U
GUGCAGAGGGAGACUUCAC^ C        AA         CA   A--       AGGGACG 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-728-P2_5p

mirBase accessionNone
Sequence
0- AAAUGUAGUAGACUAUAAGUAUAC -24
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Star sequence

Gmo-Mir-728-P2_3p*

mirBase accessionMIMAT0044221
Sequence
41- AUACUAAGUACACUAUGUUUAA -63
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