MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-728-P1

Family name MIR-728 (all species)
Seed UACUAAG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-728a
Paralogues Gmo-Mir-728-P2 
Orthologues Dre-Mir-728-P1  Loc-Mir-728  Tni-Mir-728-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Neopterygii
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_1176: 123530-123589 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUGGUUUUGUCCCGUGGCACUCUGGGAAAAUGUAGUAGUACUAUAAGUAUACGUGGACAAUGGAAGUAUACUAAGUACACUACGUUUAUCCAGAGGUGCUUGCUGUCUGCUGGCUUGA
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Structure
        10         20         30        40        50        60 
GGCUGGUUUUGUCCCGU-    -|      A         A     AUA       GUGGAC 
                  GGCA CUCUGGG AAAUGUAGU GUACU   AGUAUAC      \
                  UCGU GAGACCU UUUGCAUCA CAUGA   UCAUAUG      A
AGUUCGGUCGUCUGUCGU    G^      A         -     A--       AAGGUA 
.       110       100        90         80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-728-P1_5p*

mirBase accessionNone
Sequence
0- AAUGUAGUAGUACUAUAAGUAUAC -24
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Mature sequence

Gmo-Mir-728-P1_3p

mirBase accessionMIMAT0044109
Sequence
39- AUACUAAGUACACUACGUUUA -60
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