MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-728-P1

Family name MIR-728 (all species)
Seed UACUAAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-728
Paralogues
Orthologues Gmo-Mir-728-P1  Loc-Mir-728  Tni-Mir-728-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Neopterygii
Genome context
(danRer11)		 chr24: 26190564-26190624 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-728-P1)		 Mir-727-P1-v1 chr24: 26185423-26185489 [+] UCSC Ensembl
Mir-727-P1-v2 chr24: 26185425-26185487 [+] UCSC Ensembl
Mir-728-P1 chr24: 26190564-26190624 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGUUUGGAGUGUUUGGCAUCUUCUGAGGAAAUGUAGUAGACUAUAAGUAUACAGUGAACAUGAACGUAUACUAAGUACACUACGUUUUCUCAAGAGGUGGAAUCUCACCGCGUGUUUUG
Get precursor sequence
Structure
        10          20        30        40        50        60 
GUGGUUUGGAGUGUUUGG--|    UC              AG   AUA       AGUGAA 
                    CAUCU  UGAGGAAAUGUAGU  ACU   AGUAUAC      \
                    GUGGA  ACUCUUUUGCAUCA  UGA   UCAUAUG      C
GUUUUGUGCGCCACUCUAAG^    GA              CA   A--       CAAGUA 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-728-P1_5p*
mirBase accessionNone
Sequence 
0- AAAUGUAGUAGACUAUAAGUAUAC -24
Get sequence
Mature sequence

Dre-Mir-728-P1_3p
mirBase accessionMIMAT0003757
Sequence 
39- AUACUAAGUACACUACGUUUUC -61
Get sequence
Proposed targets TargetScanFish: dre-miR-728