MirGeneDB ID | Tni-Mir-728-P1 |
Family name |
MIR-728 (all species) |
Seed |
AUACUAA |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-728-P2
|
Orthologues |
Dre-Mir-728-P1
Gmo-Mir-728-P1
Loc-Mir-728
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Neopterygii
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
6: 6651213-6651275 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCCGCCUGCCUGAUCUGCGGCGCCCUGGAGAAAUGUAGUAGACUUAAAGUAUACGUGUGUGAUCAAAGAGUAUACUAAGUACACUACGUUUAUCCAGGGGGGCUCGCUGCCAGCUGGAGUCCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCCGCCUGCCUGAUCUGC- G -| G AG AA GUGUGUG
GGC C CCUGGA AAAUGUAGU ACUU AGUAUAC \
UCG G GGACCU UUUGCAUCA UGAA UCAUAUG A
CCCUGAGGUCGACCGUCGC G G^ A CA -- AGAAACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Tni-Mir-728-P1_5p* |
mirBase accession | None |
Sequence |
0- AAAUGUAGUAGACUUAAAGUAUACG -25
Get sequence
|
Mature sequence |
Tni-Mir-728-P1_3p |
mirBase accession | None |
Sequence |
40- UAUACUAAGUACACUACGUUUAU -63
Get sequence
|