| MirGeneDB ID | Loc-Mir-728 |
|---|
| Family name |
MIR-728 (all species) |
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| Seed |
UACUAAG |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Dre-Mir-728-P1
Gmo-Mir-728-P1
Gmo-Mir-728-P2
Mal-Mir-728-P2
Tni-Mir-728-P1
Tni-Mir-728-P2
|
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| Node of Origin (locus) |
Neopterygii
|
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| Node of Origin (family) |
Neopterygii
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Genome context
(LepOcu1) |
LG14: 13267886-13267947 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUAUCACUGUAACUUUGGCAUUCCUUAGAAAAAUGUAGUAUACUAUAAGUGUACCUUCCACAUCAACAGUAUACUAAGUACACUACGUUUUCUUGAGGAAAACUGCAUCAACCCAAGCCGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUAUCACUGUAACUUUGGCA--| GA A AUA CUUCCA
UUCCUUA AAAAUGUAGU UACU AGUGUAC C
AAGGAGU UUUUGCAUCA AUGA UCAUAUG A
GAGCCGAACCCAACUACGUCAA^ UC C A-- ACAACU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-728_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AAAUGUAGUAUACUAUAAGUGUAC -24
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-728_3p |
| mirBase accession | None |
|---|
| Sequence |
40- AUACUAAGUACACUACGUUUUC -62
Get sequence
|
|---|
