MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-956-v2

Family name MIR-956 (all species)
Seed UCGAGAC
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-956-v1 
Orthologues Dan-Mir-956-v2  Dme-Mir-956-v2  Dmo-Mir-956-v2  Dsi-Mir-956-v2  Dya-Mir-956-v2 
Node of Origin (locus) Glossinidae + Drosophilidae
Node of Origin (family) Glossinidae + Drosophilidae
Genome context
(GpalI1)		 Scaffold41: 1675605-1675724 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGAUUUAUAUUAUAGAUAUAUUCUUAUCGCGUUUGGAAUGGUCUCGCUAGCUAACGGCUAAAGUUUUGUCAUGACACAGAAAUCCAUUAGAACAUAAUACAUAACAUGGCACCACCUUGAUGAUAGUUUCGAGACCACUCUAAUCACAUGCAAAAUUUUCAAUUAUAUGCAAAUUUUAU
Get precursor sequence
Structure
        10        20        30            40        50        60        70        80         
UAGAUUUAUAUUAUAGAUAUAUUCUUAUC    ----|    A        CU   UAACGGCUAAAGUUUUGUCAUGACACAGAAAUCCAU 
                             GCGU    UUGGA UGGUCUCG  AGC                                    U
                             CGUA    AAUCU ACCAGAGC  UUG                                    A
UAUUUUAAACGUAUAUUAACUUUUAAAA-    CACU^    C        U-   AUAGUAGUUCCACCACGGUACAAUACAUAAUACAAG 
.       170       160        150       140       130        120       110       100        90
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl
Star sequence

Gpa-Mir-956-v2_5p*
mirBase accessionNone
Sequence 
0- CGUUUGGAAUGGUCUCGCUAGC -22
Get sequence
Mature sequence

Gpa-Mir-956-v2_3p
mirBase accessionNone
Sequence 
98- UUCGAGACCACUCUAAUCACAU -120
Get sequence