| MirGeneDB ID | Hvu-Mir-2030 |
|---|
| Family name |
MIR-2030 (all species) |
|---|
| Seed |
AGCAUAA |
|---|
| Species |
Freshwater-polyp (Hydra vulgaris) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Nve-Mir-2030
|
|---|
| Node of Origin (locus) |
Cnidaria
|
|---|
| Node of Origin (family) |
Cnidaria
|
|---|
Genome context
(Hm105_1.0) |
Sc4wPfr_484: 3271194-3271244 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGCAAGACGAAUCUUGUCUAUUCCCAGGGUAGCAUAACAUUGUAAGAAACAUUUAUUGCGUCUUACACUGCUGUGCUACCCAGGGUAGCAAGCAAUGUUCCCAUGUAUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGCAAGACGAAUCUUGUCUAUU--| A A U AA UU
CCC GGGUAGCAUA CA UGUAAGA CA \
GGG CCCAUCGUGU GU ACAUUCU GU U
AGUAUGUACCCUUGUAACGAACGAU^ A C C GC UA
. 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Hvu-Mir-2030_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAGCAUAACAUUGUAAGAAACA -22
Get sequence
|
|---|
| Star sequence |
Hvu-Mir-2030_3p* |
| mirBase accession | None |
|---|
| Sequence |
29- CGUCUUACACUGCUGUGCUACC -51
Get sequence
|
|---|
