MirGeneDB ID | Laf-Mir-142-P1-v2 |
---|---|
Family name | MIR-142 (all species) |
Seed | UAGUGUU |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | Laf-Mir-142-P1-v1 Laf-Mir-142-P1-v3 Laf-Mir-142-P1-v4 |
Orthologues | |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010058.1: 10514762-10514820 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCAGAUGGACAGACAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAACAGCACUGGAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUUCGGAGACCACGCGet precursor sequence |
Structure | 10 20 30 40 50 GCAGAUGGACAGACAGA--| G C A UAACAGCA CAGUGCA UCA CCAUAAAGUAG AAGCACUAC \ GUCAUGU AGU GGUAUUUCAUC UUUGUGAUG C CGCACCAGAGGCUUCGGGU^ G A C UGGGAGGU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Star sequence | Laf-Mir-142-P1-v2_5p* |
mirBase accession | None |
Sequence |
0- CAUAAAGUAGAAAGCACUACUA -22
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|
Mature sequence | Laf-Mir-142-P1-v2_3p |
mirBase accession | None |
Sequence |
37- GUAGUGUUUCCUACUUUAUGGA -59
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|