| MirGeneDB ID | Laf-Mir-142-P1-v3 |
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| Family name |
MIR-142 (all species) |
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| Seed |
GUAGUGU |
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| Species |
African bush elephant (Loxodonta africana) |
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| MiRBase ID |
|
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| Paralogues |
Laf-Mir-142-P1-v1
Laf-Mir-142-P1-v2
Laf-Mir-142-P1-v4
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| Orthologues |
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_000001905.1_Loxafr3.0) |
GL010058.1: 10514762-10514820 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCAGAUGGACAGACAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAACAGCACUGGAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUUCGGAGACCACGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCAGAUGGACAGACAGA--| G C A UAACAGCA
CAGUGCA UCA CCAUAAAGUAG AAGCACUAC \
GUCAUGU AGU GGUAUUUCAUC UUUGUGAUG C
CGCACCAGAGGCUUCGGGU^ G A C UGGGAGGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Star sequence |
Laf-Mir-142-P1-v3_5p* |
| mirBase accession | None |
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| Sequence |
0- CAUAAAGUAGAAAGCACUACUAA -23
Get sequence
|
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| Mature sequence |
Laf-Mir-142-P1-v3_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UGUAGUGUUUCCUACUUUAUGGA -59
Get sequence
|
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