| MirGeneDB ID | Laf-Mir-142-P1-v3 |
|---|---|
| Family name | MIR-142 (all species) |
| Seed | GUAGUGU |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-142-P1-v1 Laf-Mir-142-P1-v2 Laf-Mir-142-P1-v4 |
| Orthologues | |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010058.1: 10514762-10514820 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCAGAUGGACAGACAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAACAGCACUGGAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUUCGGAGACCACGCGet precursor sequence |
| Structure | 10 20 30 40 50 GCAGAUGGACAGACAGA--| G C A UAACAGCA CAGUGCA UCA CCAUAAAGUAG AAGCACUAC \ GUCAUGU AGU GGUAUUUCAUC UUUGUGAUG C CGCACCAGAGGCUUCGGGU^ G A C UGGGAGGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Laf-Mir-142-P1-v3_5p* |
| mirBase accession | None |
| Sequence |
0- CAUAAAGUAGAAAGCACUACUAA -23
Get sequence
|
| Mature sequence | Laf-Mir-142-P1-v3_3p |
| mirBase accession | None |
| Sequence |
36- UGUAGUGUUUCCUACUUUAUGGA -59
Get sequence
|
