MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-5735-P1

Family name MIR-5735 (all species)
Seed GGACAAC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-5735-P2 
Orthologues Csc-Mir-5735 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Chelicerata
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013666998.1: 42493-42552 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUACAGUUCAGGAGAAGCCUUCUGCUUUGCACCUUUCUCUUGUUGUCCACUGUGCUAUGUAGACGUCAGUGGACAACAGGAUAAUGGCGUAGAGCGGAAUGGCAAUACAAUCCAGUUUAU
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Structure
        10          20        30        40        50         
UUACAGUUCAGGAGAAG-  -|          A  U  C              GUGCUAU 
                  CC UUCUGCUUUGC CC UU UCUUGUUGUCCACU       G
                  GG AAGGCGAGAUG GG AA AGGACAACAGGUGA       U
UAUUUGACCUAACAUAAC  U^          C  U  U              CUGCAGA 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 5p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-5735-P1_5p*

mirBase accessionNone
Sequence
0- ACCUUUCUCUUGUUGUCCACU -21
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Mature sequence

Lpo-Mir-5735-P1_3p

mirBase accessionNone
Sequence
39- UGGACAACAGGAUAAUGGCGU -60
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