| MirGeneDB ID | Lpo-Mir-5735-P1 |
|---|
| Family name |
MIR-5735 (all species) |
|---|
| Seed |
GGACAAC |
|---|
| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Lpo-Mir-5735-P2
|
|---|
| Orthologues |
Csc-Mir-5735
Tur-Mir-5735
|
|---|
| Node of Origin (locus) |
L. polyphemus
|
|---|
| Node of Origin (family) |
Chelicerata
|
|---|
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666998.1: 42493-42552 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUACAGUUCAGGAGAAGCCUUCUGCUUUGCACCUUUCUCUUGUUGUCCACUGUGCUAUGUAGACGUCAGUGGACAACAGGAUAAUGGCGUAGAGCGGAAUGGCAAUACAAUCCAGUUUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUACAGUUCAGGAGAAG- -| A U C GUGCUAU
CC UUCUGCUUUGC CC UU UCUUGUUGUCCACU G
GG AAGGCGAGAUG GG AA AGGACAACAGGUGA U
UAUUUGACCUAACAUAAC U^ C U U CUGCAGA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on the 5p arm. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Lpo-Mir-5735-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACCUUUCUCUUGUUGUCCACU -21
Get sequence
|
|---|
| Mature sequence |
Lpo-Mir-5735-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGGACAACAGGAUAAUGGCGU -60
Get sequence
|
|---|
